Updated on 2024/05/11

写真a

 
LIU YUTING
 
Organization
Academic Assembly Institute of Medicine and Dentistry Specially Appointed Assistant Professor
Graduate School of Medical and Dental Sciences Specially Appointed Assistant Professor
Title
Specially Appointed Assistant Professor
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Degree

  • 博士(生物) ( 2023.3   奈良先端科学技術大学院大学 )

Research Interests

  • metabolomics;molecular biology; bioinformatics

Research History (researchmap)

  • Niigata University Graduate School of Medical and Dental Sciences   Medical AI Center / Bioinformatics Laboratory   Assistant professor

    2023.4

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    Country:Japan

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Research History

  • Niigata University   Graduate School of Medical and Dental Sciences   Specially Appointed Assistant Professor

    2023.4

  • Niigata University   Institute of Medicine and Dentistry, Academic Assembly   Specially Appointed Assistant Professor

    2023.4

Education

  • Nara Institute of Science and Technology   先端科学科   Plant secondary metabolism

    2020.4 - 2023.3

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    Country: Japan

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  • Beijing Forestry University   Ornamental Horticulture   Flower Molecular Biology

    2016.9 - 2019.6

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    Country: China

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  • Beijing Forestry University   Landscape Architecture   Landscape Architecture

    2012.9 - 2016.6

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    Country: China

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Professional Memberships

  • Japanese Society of Plant Microbe Interactions

    2022 - 2023

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  • The Japanese Society of Plant Physiologists

    2020 - 2022

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Papers

  • Diversification of Chemical Structures of Methoxylated Flavonoids and Genes Encoding Flavonoid-O-Methyltransferases

    Yuting Liu, Alisdair R. Fernie, Takayuki Tohge

    Plants   11 ( 4 )   564 - 564   2022.2

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    Authorship:Lead author   Publishing type:Research paper (scientific journal)   Publisher:MDPI AG  

    The O-methylation of specialized metabolites in plants is a unique decoration that provides structural and functional diversity of the metabolites with changes in chemical properties and intracellular localizations. The O-methylation of flavonoids, which is a class of plant specialized metabolites, promotes their antimicrobial activities and liposolubility. Flavonoid O-methyltransferases (FOMTs), which are responsible for the O-methylation process of the flavonoid aglycone, generally accept a broad range of substrates across flavones, flavonols and lignin precursors, with different substrate preferences. Therefore, the characterization of FOMTs with the physiology roles of methoxylated flavonoids is useful for crop improvement and metabolic engineering. In this review, we summarized the chemodiversity and physiology roles of methoxylated flavonoids, which were already reported, and we performed a cross-species comparison to illustrate an overview of diversification and conserved catalytic sites of the flavonoid O-methyltransferases.

    DOI: 10.3390/plants11040564

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  • Functional analysis of the ScAG and ScAGL11 MADS-box transcription factors for anthocyanin biosynthesis and bicolour pattern formation in <i>Senecio cruentus</i> ray florets

    Fangting Qi, Yuting Liu, Yiliu Luo, Yumeng Cui, Chenfei Lu, Hao Li, He Huang, Silan Dai

    Horticulture Research   9   2022.1

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    Publishing type:Research paper (scientific journal)   Publisher:Oxford University Press (OUP)  

    Abstract

    Cineraria (Senecio cruentus) is an ornamental plant with pure colour and bicolour cultivars, widely used for landscaping. Anthocyanin biosynthesis influences coloration patterns in cineraria. However, how anthocyanins accumulate and distribute in cineraria is poorly understood. This study investigated the molecular mechanisms underlying anthocyanin biosynthesis and bicolour formation in cineraria using pure colour and bicolour cultivars. Transcriptome and gene expression analysis showed that five genes, ScCHS2, ScF3H1, ScDFR3, ScANS, and ScbHLH17, were inhibited in the white cultivar and colourless regions of bicolour cultivars. In contrast, two MADS-box genes, ScAG and ScAGL11, showed significantly higher expression in the colourless regions of bicolour cultivars. ScAG and ScAGL11 were localized in the nucleus and co-expressed with the bicolour trait. Further functional analysis verified that ScAG inhibits anthocyanin accumulation in tobacco (Nicotiana tabacum). However, virus-induced gene silencing (VIGS) experiments showed that silencing of ScAG and ScAGL11 increases anthocyanin content in cineraria leaves. Similar results were observed when ScAG and ScAGL11 were silenced in the cineraria capitulum, accompanied by the smaller size of the colourless region, specifically in the ScAG/ScAGL11-silenced plants. The expression of ScCHS2, ScDFR3, and ScF3H1 increased in silenced cineraria leaves and capitulum. Furthermore, yeast two-hybrid and bimolecular fluorescence complementation experiments demonstrated that ScAG interacts with ScAGL11. Moreover, ScAG directly inhibited the transcription of ScF3H1 while ScAGL11 inhibited ScDFR3 expression by binding to their promoters separately. The findings reported herein indicate that ScAG and ScAGL11 negatively regulate anthocyanin biosynthesis in cineraria ray florets, and their differential expression in ray florets influences the bicolour pattern appearance.

    DOI: 10.1093/hr/uhac071

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    Other Link: https://academic.oup.com/hr/article-pdf/doi/10.1093/hr/uhac071/44136951/uhac071.pdf

  • Cross-Species Metabolic Profiling of Floral Specialized Metabolism Facilitates Understanding of Evolutional Aspects of Metabolism Among Brassicaceae Species

    Yuting Liu, Mutsumi Watanabe, Sayuri Yasukawa, Yuriko Kawamura, Chaiwat Aneklaphakij, Alisdair R. Fernie, Takayuki Tohge

    Frontiers in Plant Science   12   2021.3

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    Authorship:Lead author   Publishing type:Research paper (scientific journal)   Publisher:Frontiers Media SA  

    Plants produce a variety of floral specialized (secondary) metabolites with roles in several physiological functions, including light-protection, attraction of pollinators, and protection against herbivores. Pigments and volatiles synthesized in the petal have been focused on and characterized as major chemical factors influencing pollination. Recent advances in plant metabolomics have revealed that the major floral specialized metabolites found in land plant species are hydroxycinnamates, phenolamides, and flavonoids albeit these are present in various quantities and encompass diverse chemical structures in different species. Here, we analyzed numerous floral specialized metabolites in 20 different Brassicaceae genotypes encompassing both different species and in the case of crop species different cultivars including self-compatible (SC) and self-incompatible (SI) species by liquid chromatography-mass spectrometry (LC-MS). Of the 228 metabolites detected in flowers among 20 Brassicaceae species, 15 metabolite peaks including one phenylacyl-flavonoids and five phenolamides were detected and annotated as key metabolites to distinguish SC and SI plant species, respectively. Our results provide a family-wide metabolic framework and delineate signatures for compatible and incompatible genotypes thereby providing insight into evolutionary aspects of floral metabolism in Brassicaceae species.

    DOI: 10.3389/fpls.2021.640141

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  • Establishment of virus-induced gene silencing system and functional analysis of ScbHLH17 in Senecio cruentus

    Yajun Li, Yuting Liu, Fangting Qi, Chengyan Deng, Chenfei Lu, He Huang, Silan Dai

    Plant Physiology and Biochemistry   147   272 - 279   2020.2

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    Authorship:Lead author   Publishing type:Research paper (scientific journal)   Publisher:Elsevier BV  

    DOI: 10.1016/j.plaphy.2019.12.024

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  • Comparative transcriptomics and weighted gene co-expression correlation network analysis (WGCNA) reveal potential regulation mechanism of carotenoid accumulation in Chrysanthemum × morifolium

    Chenfei Lu, Ya Pu, Yuting Liu, Yajun Li, Jiaping Qu, He Huang, Silan Dai

    Plant Physiology and Biochemistry   142   415 - 428   2019.9

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    Publishing type:Research paper (scientific journal)   Publisher:Elsevier BV  

    DOI: 10.1016/j.plaphy.2019.07.023

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  • Transcriptome Analysis of Chrysanthemum lavandulifolium Response to Salt Stress and Overexpression a K+ Transport ClAKT Gene-enhanced Salt Tolerance in Transgenic Arabidopsis

    He Huang, Yuting Liu, Ya Pu, Mi Zhang, Silan Dai

    Journal of the American Society for Horticultural Science   144 ( 4 )   219 - 235   2019.7

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    Authorship:Lead author   Publishing type:Research paper (scientific journal)   Publisher:American Society for Horticultural Science  

    Plant growth and development are significantly affected by salt stress. Chrysanthemum lavandulifolium is a halophyte species and one of the ancestors of chrysanthemum (C. ×morifolium). Understanding how this species tolerates salt stress could provide vital insight for clarifying the salt response systems of higher plants, and chrysanthemum-breeding programs could be improved. In this study, salt tolerance was compared among C. lavandulifolium and three chrysanthemum cultivars by physiological experiments, among which C. lavandulifolium and Jinba displayed better tolerance to salt stress than the other two cultivars, whereas Xueshan was a salt-sensitive cultivar. Using the transcriptome database of C. lavandulifolium as a reference, we used digital gene expression technology to analyze the global gene expression changes in C. lavandulifolium seedlings treated with 200 mm NaCl for 12 hours compared with seedlings cultured in normal conditions. In total, 2254 differentially expressed genes (DEGs), including 1418 up-regulated and 836 down-regulated genes, were identified. These DEGs were significantly enriched in 35 gene ontology terms and 29 Kyoto Encyclopedia of Genes and Genomes pathways. Genes related to signal transduction, ion transport, proline biosynthesis, reactive oxygen species scavenging systems, and flavonoid biosynthesis pathways were relevant to the salt tolerance of C. lavandulifolium. Furthermore, comparative gene expression analysis was conducted using reverse transcription polymerase chain reaction to compare the transcriptional levels of significantly up-regulated DEGs in C. lavandulifolium and the salt-sensitive cultivar Xueshan, and species-specific differences were observed. The analysis of one of the DEGs, ClAKT, an important K<sup>+</sup> transport gene, was found to enable transgenic Arabidopsis thaliana to absorb K<sup>+</sup> and efflux Na<sup>+</sup> under salt stress and to absorb K<sup>+</sup> under drought stress. The present study investigated potential genes and pathways involved in salt tolerance in C. lavandulifolium and provided a hereditary resource for the confinement of genes and pathways responsible for salt tolerance in this species. This study provided a valuable source of reference genes for chrysanthemum cultivar transgenesis breeding.

    DOI: 10.21273/jashs04629-18

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    Other Link: https://journals.ashs.org/downloadpdf/journals/jashs/144/4/article-p219.xml

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Presentations

  • Analysis of chemical diversity of methoxylated-flavonoids and the genes encoding flavonoid-O-methyltransferases

    Yuting Liu

    第63回日本植物生理学会年会(つくば)  2022.3 

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    Event date: 2022.3

    Presentation type:Poster presentation  

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  • Cross-species metabolic profiling of floral specialized metabolism facilitates understanding of evolutional aspects of metabolism among Brassicaceae species

    Yuting Liu

    第62回日本植物生理学会年会(松江)  2021.3 

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    Event date: 2021.3

    Presentation type:Oral presentation (general)  

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