Updated on 2026/07/21

写真a

 
SUGIMOTO Hayuki
 
Organization
Academic Assembly Institute of Science and Technology Faculty of Agriculture Associate Professor
Faculty of Agriculture Associate Professor
Graduate School of Science and Technology Life and Food Sciences Applied Life and Food Sciences Associate Professor
Title
Associate Professor
External link

Degree

  • 博士(学術) ( 2008.7   三重大学 )

Research Interests

  • 微生物

  • タンパク質・酵素

  • フォールディング

  • 構造安定性

  • calorimetry

Research Areas

  • Life Science / Applied biochemistry

  • Life Science / Applied microbiology

  • Environmental Science/Agriculture Science / Environmental agriculture

Research History (researchmap)

  • Niigata University   Faculty of Agriculture

    2011.4

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  • Kuwansei Univ.   Graduate School of Science and Technology

    2008.8 - 2011.3

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Research History

  • Niigata University   Graduate School of Science and Technology Life and Food Sciences Applied Life and Food Sciences   Associate Professor

    2016.4

  • Niigata University   Graduate School of Science and Technology Life and Food Sciences   Assistant Professor

    2011.4 - 2016.3

  • Niigata University   Abolition organization Applied Biological Chemistry   Assistant Professor

    2011.4 - 2016.3

  • Niigata University   Graduate School of Science and Technology Life and Food Sciences   Assistant Professor

    2011.4 - 2016.3

Education

  • Mie Univ.   Graduate school of Bioresources   博士後期課程

    2005.4 - 2008.7

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Professional Memberships

  • THE BIOPHYSICAL SOCIETY OF JAPAN

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  • THE JAPANESE BIOCHEMICAL SOCIETY

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  • The Protein Society (USA)

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  • PROTEIN SCIENCE SOCIETY OF JAPAN

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  • THE JAPAN SOCIETY OF CALORIMETRY AND THERMAL ANALYSIS

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  • JAPAN SOCIETY FOR BIOSCIENCE, BIOTECHNOLOGY, AND AGROCHEMISTRY

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  • 日本キチン・キトサン学会

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Papers

  • Identification of the Csr global regulatory system mediated by small RNA decay in Aeromonas salmonicida Reviewed

    Olga Gladyshchuk, Masaki Yoshida, Koume Togashi, Hayuki Sugimoto, Kazushi Suzuki

    The Journal of General and Applied Microbiology   70 ( 1 )   30 - 42   2024.7

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    Language:English   Publishing type:Research paper (scientific journal)   Publisher:Microbiology Research Foundation  

    DOI: 10.2323/jgam.2023.12.004

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  • Unfolding of the bacterial fibronectin type III domains from family 18 glycoside hydrolases Reviewed

    Otagaki T, Nakajima A, Suzuki K, Sugimoto H

    Chitin Chitosan Research   30 ( 1 )   9 - 19   2024.4

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  • Chitinase system of Aeromonas salmonicida, and characterization of enzymes involved in chitin degradation Reviewed International journal

    Iuliia Pentekhina, Tatsuyuki Hattori, Dinh Minh Tran, Mizuki Shima, Takeshi Watanabe, Hayuki Sugimoto, Kazushi Suzuki

    Bioscience, Biotechnology, and Biochemistry   84 ( 9 )   1936 - 1947   2020.9

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    Language:English   Publishing type:Research paper (scientific journal)   Publisher:Informa UK Limited  

    The genes encoding chitin-degrading enzymes in Aeromonas salmonicida SWSY-1.411 were identified and cloned in Escherichia coli. The strain contained two glycoside hydrolase (GH) families 18 chitinases: AsChiA and AsChiB, two GH19 chitinases: AsChiC and AsChiD, and an auxiliary activities family 10 protein, lytic polysaccharide monooxygenase: AsLPMO10A. These enzymes were successfully expressed in E. coli and purified. AsChiB had the highest hydrolytic activity against insoluble chitin. AsChiD had the highest activity against water-soluble chitin. The peroxygenase activity of AsLPMO10A was lower compared to SmLPMO10A from Serratia marcescens. Synergism on powdered chitin degradation was observed when AsChiA and AsLPMO10A were combined with other chitinases of this strain. More than twice the increase of the synergistic effect was observed when powdered chitin was treated by a combination of AsLPMO10A with all chitinases. GH19 chitinases suppressed the hyphal growth of Trichoderma reesei.

    DOI: 10.1080/09168451.2020.1771539

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  • Unfolding of CBP21, a lytic polysaccharide monooxygenase, without dissociation of its copper ion cofactor Reviewed

    Hayuki Sugimoto, Yuichi Nakajima, Ayaka Motoyama, Erina Katagiri, Takeshi Watanabe, Kazushi Suzuki

    Biopolymers   111 ( 1 )   e23339   2020.1

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    Publishing type:Research paper (scientific journal)   Publisher:Wiley  

    DOI: 10.1002/bip.23339

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    Other Link: https://onlinelibrary.wiley.com/doi/full-xml/10.1002/bip.23339

  • A novel chitin-binding mode of the chitin-binding domain of chitinase A1 from Bacillus circulans WL-12 revealed by solid-state NMR Reviewed

    Tanaka, Hiroki, Akutsu, Hideo, Yabuta, Izumi, Hara, Masashi, Sugimoto, Hayuki, Ikegami, Takahisa, Watanabe, Takeshi, Fujiwara, Toshimichi

    FEBS LETTERS   592 ( 18 )   3173 - 3182   2018.9

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1002/1873-3468.13226

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  • Identification and characterization of chitinolytic bacteria isolated from a freshwater lake Reviewed

    Dinh Minh Tran, Hayuki Sugimoto, Dzung Anh Nguyen, Takeshi Watanabe, Kazushi Suzuki

    Bioscience, Biotechnology and Biochemistry   82 ( 2 )   343 - 355   2018

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    Language:English   Publishing type:Research paper (scientific journal)   Publisher:Japan Society for Bioscience Biotechnology and Agrochemistry  

    DOI: 10.1080/09168451.2017.1422969

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  • Calorimetric study on the binding of beta-cyclodextrin to the starch-binding domain of Aspergillus niger glucoamylase Reviewed

    Masuda Y, Miyake H, Tanaka A, Sugimoto H

    Netsu Sokutei   44 ( 4 )   135 - 138   2017

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  • Differences in the roles of the two surface-exposed tyrosine residues, Y240 and Y481, of Serratia marcescens chitinase B during processive degradation of crystalline chitin Reviewed

    Hayuki Sugimoto, Keita Nakamura, Yuji Nishino, Yuta Idezawa, Akiko Fujinuma, Kazushi Suzuki, Takeshi Watanabe

    JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY   61 ( 6 )   255 - 261   2016

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.2323/jgam.61.255

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  • Analysis of subfamily C chitinases in bacterial glycoside hydrolase family 18 Reviewed

    21 ( 3 )   209 - 218   2015.11

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    Language:Japanese   Publishing type:Research paper (scientific journal)  

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  • Two-way traffic of glycoside hydrolase family 18 processive chitinases on crystalline chitin Reviewed

    Kiyohiko Igarashi, Takayuki Uchihashi, Taku Uchiyama, Hayuki Sugimoto, Masahisa Wada, Kazushi Suzuki, Shohei Sakuda, Toshio Ando, Takeshi Watanabe, Masahiro Samejima

    NATURE COMMUNICATIONS   5   3975   2014.6

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1038/ncomms4975

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  • NMR Analysis of a Kinetically Trapped Intermediate of a Disulfide-Deficient Mutant of the Starch-Binding Domain of Glucoamylase Reviewed

    Hayuki Sugimoto, Yasuo Noda, Shin-ichi Segawa

    JOURNAL OF MOLECULAR BIOLOGY   412 ( 2 )   304 - 315   2011.9

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1016/j.jmb.2011.07.025

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  • Kinetically trapped metastable intermediate of a disulfide-deficient mutant of the starch-binding domain of glucoamylase Reviewed

    Hayuki Sugimoto, Miho Nakaura, Shigenori Nishimura, Shuichi Karita, Hideo Miyake, Akiyoshi Tanaka

    PROTEIN SCIENCE   18 ( 8 )   1715 - 1723   2009.8

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1002/pro.188

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  • Stabilization mechanism of chloride ion on thermal denaturation of Arthrobacter sarcosine oxidase Reviewed

    Sugimoto H, Nishiya Y, Miyake H, Tanaka A

    Netsu Sokutei   35   76 - 80   2008

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  • Thermodynamic effects of disulfide bond on thermal unfolding of the starch-binding domain of Aspergillus niger glucoamylase Reviewed

    Hayuki Sugimoto, Miho Nakaura, Yoshie Kosuge, Kunio Imai, Hideo Miyake, Shuichi Karita, Akiyoshi Tanaka

    BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY   71 ( 6 )   1535 - 1541   2007.6

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1271/bbb.70098

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  • Differential Scanning Calorimetry of the Effects of Ca^<2+> on the Thermal Unfolding of Pseudomonas cepacia Lipase Reviewed

    TANAKA Akiyoshi, SUGIMOTO Hayuki, MUTA Yuko, MIZUNO Takafumi, SENOO Keishi, OBATA Hitoshi, INOUYE Kuniyo

    Bioscience, Biotechnology, and Biochemistry   67 ( 1 )   207 - 210   2003.1

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    Language:English   Publisher:Japan Society for Bioscience, Biotechnology, and Agrochemistry  

    &nbsp;&nbsp;Thermal unfolding of <i>P. cepacia</i> lipase was observed by adiabatic differential scanning microcalorimetry in the absence and presence of calcium ions at pH 8, and thermodynamic parameters of unfolding were evaluated to analyze the unfolding mechanism of the enzyme. The temperature of unfolding was higher at higher concentrations of Ca<sup>2+</sup>. From the Ca<sup>2+</sup> concentration-dependence of the unfolding temperature, the number of calcium ions that dissociated from the enzyme molecule upon unfolding was estimated to be one. These results confirmed the validity of the unfolding mechanism proposed previously: NCa<sup>2+</sup>↔D+Ca<sup>2+</sup>, where N and D represent the native and denatured states, respectively, of the enzyme.<br>

    DOI: 10.1271/bbb.67.207

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  • Regulation of the chitin degradation and utilization system by the ChiX small RNA in Serratia marcescens 2170 Reviewed

    Kazushi Suzuki, Mari Shimizu, Naomi Sasaki, Chisana Ogawa, Haruka Minami, Hayuki Sugimoto, Takeshi Watanabe

    BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY   80 ( 2 )   376 - 385   2016.2

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1080/09168451.2015.1083399

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  • Construction of a CBP2l-defective mutant of Serratia marcescens 2170 Reviewed

    SUGIMOTO Hayuki

    21 ( 2 )   46 - 51   2015

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  • - Reviewed

    SUGIMOTO Hayuki

    応用糖質科学   4   107 - 112   2014

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  • Construction and basic characterization of deletion mutants of the genes involved in chitin utilization by Serratia marcescens 2170 Reviewed

    Shinya Takanao, Syouta Honma, Takuma Miura, Chisana Ogawa, Hayuki Sugimoto, Kazushi Suzuki, Takeshi Watanabe

    BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY   78 ( 3 )   524 - 532   2014

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1080/09168451.2014.882755

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  • Identification of a Csr system in Serratia marcescens 2170 Reviewed

    Manabu Ito, Kazuki Nomura, Hayuki Sugimoto, Takeshi Watanabe, Kazushi Suzuki

    JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY   60 ( 2 )   79 - 88   2014

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.2323/jgam.60.79

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  • Involvement of Gln679, in addition to Trp687, in chitin-binding activity of the chitin-binding domain of chitinase A1 from Bacillus circulans WL-12 Reviewed

    Masashi Hara, Hayuki Sugimoto, Michio Uemura, Ken-ichi Akagi, Kazushi Suzuki, Takahisa Ikegami, Takeshi Watanabe

    JOURNAL OF BIOCHEMISTRY   154 ( 2 )   185 - 193   2013.8

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1093/jb/mvt043

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  • Regulation of Chitinase Production by the 5 '-Untranslated Region of the ybfM in Serratia marcescens 2170 Reviewed

    Tadayuki Toratani, Kazushi Suzuki, Mari Shimizu, Hayuki Sugimoto, Takeshi Watanabe

    BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY   76 ( 10 )   1920 - 1924   2012.10

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1271/bbb.120403

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  • Phosphocholine-Containing Glycosyl Inositol-Phosphoceramides from Trichoderma viride Induce Defense Responses in Cultured Rice Cells Reviewed

    Ryosuke Uchiyama, Kazuhiro Aoki, Hayuki Sugimoto, Nobuko Taka, Takane Katayama, Saki Itonori, Mutsumi Sugita, Fang-Sik Che, Hidehiko Kumagai, Kenji Yamamoto

    BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY   73 ( 1 )   74 - 78   2009.1

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1271/bbb.80480

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  • Structural and thermodynamic analyses of solute-binding protein from Bifidobacterium longum specific for core 1 disaccharide and lacto-N-biose I Reviewed

    Ryuichiro Suzuki, Jun Wada, Takane Katayama, Shinya Fushinobu, Takayoshi Wakagi, Hirofumi Shoun, Hayuki Sugimoto, Akiyoshi Tanaka, Hidehiko Kumagai, Hisashi Ashida, Motomitsu Kitaoka, Kenji Yamamoto

    JOURNAL OF BIOLOGICAL CHEMISTRY   283 ( 19 )   13165 - 13173   2008.5

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1074/jbc.M709777200

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  • 2P-079 Influences of the disulfide bond of the starch-binding domain of glucoamylase on the protein stability and refolding(The 46th Annual Meeting of the Biophysical Society of Japan)

    Sugimoto Hayuki, Nakaura Miho, Nishimura Shigenori, Karita Shuichi, Miyake Hideo, Tanaka Akiyoshi

    Seibutsu Butsuri   48   S87   2008

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    Language:English   Publisher:The Biophysical Society of Japan General Incorporated Association  

    DOI: 10.2142/biophys.48.S87_3

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Books

  • 化学便覧 基礎編 改訂6版

    日本化学会( Role: Contributor ,  10章「熱的性質」 6.4 高分子)

    丸善出版  2021.1  ( ISBN:9784621305218

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    Total pages:xviii, 1509p   Language:Japanese

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  • 熱量測定・熱分析ハンドブック

    日本熱測定学会( Role: Contributor ,  5章 4.31 熱量測定とNMR)

    丸善  2020.8  ( ISBN:9784621305072

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    Total pages:xxiii, 363p   Language:Japanese

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MISC

Research Projects

  • Development of a calorimetric analysis method to assess the degradation capacity of an insoluble substrate, chitin, by bacteria.

    Grant number:24K09179

    2024.4 - 2027.3

    System name:Grants-in-Aid for Scientific Research

    Research category:Grant-in-Aid for Scientific Research (C)

    Awarding organization:Japan Society for the Promotion of Science

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    Grant amount:\4550000 ( Direct Cost: \3500000 、 Indirect Cost:\1050000 )

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  • Hyperactivation of redox enzymes in confined nano-environments

    Grant number:18H01719

    2018.4 - 2021.3

    System name:Grants-in-Aid for Scientific Research

    Research category:Grant-in-Aid for Scientific Research (B)

    Awarding organization:Japan Society for the Promotion of Science

    Tsujimura Seiya

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    Grant amount:\17550000 ( Direct Cost: \13500000 、 Indirect Cost:\4050000 )

    We demonstrated the hyperactivation of redox enzymes and the improvement of their durability by utilizing a meso-reaction field (=electrode) with a scale of several tens of nanometers. We elucidated the complex interaction between microspace, enzymes, water, and ions, and we clarified the effects of mesostructure and environmental factors in the space on the enzymes. In this way, we have provided a novel design for controlling nanospace and solution environment around the enzyme beyond the conventional morphology control. Furthermore, we developed porous electrode materials suitable for new enzymatic electrode reactions, leading a dramatic improvement in the performance of enzyme-based bioelectronics devices.

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  • Elucidation of the mechanism underlying processive hydrolysis of crystalline chitin by bacterial chitinases.

    Grant number:15K07355

    2015.4 - 2018.3

    System name:Grants-in-Aid for Scientific Research

    Research category:Grant-in-Aid for Scientific Research (C)

    Awarding organization:Japan Society for the Promotion of Science

    Watanabe Takeshi, IGARASHI Kiyohiko, SUZUKI Kazushi, SUGIMOTO Hayuki

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    Grant amount:\4940000 ( Direct Cost: \3800000 、 Indirect Cost:\1140000 )

    The ultimate goal of this research is proposition of the universal and evolved model of the mechanism for crystalline chitin degradation and utilization by chitinolytic bacteria. Therefore, "the role of the protein (CBP21) that promote degradation of crystalline chitin", "the importance of CBP21 for the biological and ecological function of the chitinolytic bacteria", "the mechanism for biodegradation of α-chitin that exists in nature more abundantly" were studied. As a results, it became clear that CBP21 is especially important for degradation and utilization of chitin close to natural condition, an amino acid residue with aromatic ring of big resonating structure at the entrance of the catalytic cleft of chitinase is very important for hydrolysis of highly crystalline chitin substrate, and that one chitinase molecule jump to another chitin chain in different orientation and begins hydrolysis in opposite direction.

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  • Elucidation of the role of aromatic amino acid residues in crystalline chitin hydrolysis and development to the mechanism of a-chitin hydrolysis

    Grant number:24580104

    2012.4 - 2015.3

    System name:Grants-in-Aid for Scientific Research

    Research category:Grant-in-Aid for Scientific Research (C)

    Awarding organization:Japan Society for the Promotion of Science

    WATANABE TAKESHI, IGARASHI Kiyohiko, SUZUKI Kazushi, SUGIMOTO Hayuki

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    Grant amount:\5460000 ( Direct Cost: \4200000 、 Indirect Cost:\1260000 )

    Chitin is a crystalline and rigid structural polysaccharide present in a variety of organisms. Elucidation of the mechanism underlying in the enzymatic degradation of crystalline chitin is very important not only from enzymological and biological view points, but also for utilization of biomass resources. In this study, critical roles of the aromatic amino acid residues, which are present on the surface of chitinase molecule and inside of its catalytic cleft, in processive hydrolysis of crystalline chitin was demonstrated.

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  • Elucidation of the denatured structure of protein in equilibrium with the native one under a physiological condition.

    Grant number:21570173

    2009 - 2011

    System name:Grants-in-Aid for Scientific Research

    Research category:Grant-in-Aid for Scientific Research (C)

    Awarding organization:Japan Society for the Promotion of Science

    SEGAWA Shin-ichi, NODA Yasuo, YUTANI Katsuhide, SUGIMOTO Hayuki

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    Grant amount:\4810000 ( Direct Cost: \3700000 、 Indirect Cost:\1110000 )

    We have studied partially ordered structures remaining in unstructured disulfide-deficient variants of lysozyme by means of NMR and H/D exchange methods. In this residual structure, two residues of I55 and L56 involved in the bottom of the α-sheet were located in a hydrophobic pocket formed with A, B and C-helices in the β-domain. Lysozyme folding appears to be initiated around this site. On the other hand, H/D exchange reactions were studied in the native state of pyrrolidone carboxyl peptidase(PCP). The native structure was found to be divided into two domains by structural changes near at the residue 70.

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  • 基質をスライドさせて連続反応を行う結晶性多糖分解酵素・キチナーゼの作動機構の 解明

    杉本華幸

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    Authorship:Principal investigator  Grant type:Competitive

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Teaching Experience (researchmap)

  • 応用微生物学

    Institution name:新潟大学農学部

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  • 遺伝子工学

    Institution name:新潟大学農学部

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  • 微生物学実験

    Institution name:新潟大学農学部

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Teaching Experience

  • 自然科学総論IV

    2026
    Institution name:新潟大学

  • 地域交流サテライト実習

    2025
    Institution name:新潟大学

  • 生物化学I

    2025
    Institution name:新潟大学

  • 土壌学概論

    2025
    Institution name:新潟大学

  • スタディ・スキルズAIb

    2023
    Institution name:新潟大学

  • 統合化学入門

    2023
    Institution name:新潟大学

  • スタディ・スキルズAIIb

    2023
    Institution name:新潟大学

  • Topics in Biotechnology and Biochemistry

    2022
    Institution name:新潟大学

  • 応用生命科学セミナー

    2022
    Institution name:新潟大学

  • 微生物の物理化学

    2022
    Institution name:新潟大学

  • 醸造学

    2021
    -
    2023
    Institution name:新潟大学

  • スタディ・スキルズAIc

    2021
    Institution name:新潟大学

  • スタディ・スキルズAIIc

    2021
    Institution name:新潟大学

  • 応用生命科学演習Ⅱ

    2020
    -
    2023
    Institution name:新潟大学

  • 卒業論文Ⅱ

    2020
    -
    2023
    Institution name:新潟大学

  • 応用生命科学実験

    2020
    -
    2023
    Institution name:新潟大学

  • 科学英語演習

    2020
    -
    2023
    Institution name:新潟大学

  • 卒業論文Ⅰ

    2020
    -
    2023
    Institution name:新潟大学

  • 応用生命科学演習Ⅰ

    2020
    -
    2023
    Institution name:新潟大学

  • Topics in Biotechnology and Biochemistry

    2020
    -
    2022
    Institution name:新潟大学

  • 農学入門Ⅱ

    2020
    -
    2021
    Institution name:新潟大学

  • 農学入門Ⅰ

    2020
    -
    2021
    Institution name:新潟大学

  • 食品科学概論

    2020
    -
    2021
    Institution name:新潟大学

  • 応用生命・食品科学セミナーⅠ

    2020
    Institution name:新潟大学

  • 応用生命・食品科学特論

    2020
    Institution name:新潟大学

  • 分子微生物学特論

    2020
    Institution name:新潟大学

  • 日本酒学A-2

    2019
    -
    2020
    Institution name:新潟大学

  • 日本酒学A-1

    2019
    -
    2020
    Institution name:新潟大学

  • 生命を知る

    2018
    Institution name:新潟大学

  • 応用微生物学

    2017
    Institution name:新潟大学

  • 基礎化学

    2017
    Institution name:新潟大学

  • 微生物機能学

    2017
    Institution name:新潟大学

  • 応用生命・食品科学概論

    2017
    -
    2020
    Institution name:新潟大学

  • 遺伝子工学

    2016
    Institution name:新潟大学

  • 醸造学

    2016
    -
    2023
    Institution name:新潟大学

  • 微生物学実験

    2014
    Institution name:新潟大学

  • 分子生命科学演習Ⅰ

    2014
    -
    2019
    Institution name:新潟大学

  • 分子生命科学演習Ⅱ

    2014
    -
    2018
    Institution name:新潟大学

  • 分子生命科学実験

    2014
    -
    2018
    Institution name:新潟大学

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