Updated on 2024/12/22
Doctor of Philosophy in Engineering ( 2024.3 Soka University )
Glycoinformatics
Bioinformatics
Database
Niigata University Medical AI Center, School of Medicine Assistant professor
2024.4
Niigata University Institute of Medicine and Dentistry, Academic Assembly Specially Appointed Assistant Professor
2024.4
Niigata University Graduate School of Medical and Dental Sciences Specially Appointed Assistant Professor
2024.4
Cooperation of GlycoPOST and UniCarb-DR towards a comprehensive glycomics data repository workflow Reviewed
Yushi Takahashi, Niclas G. Karlsson, Shujiro Okuda, Kiyoko F. Aoki-Kinoshita
Analytical and Bioanalytical Chemistry 2024.11
jPOST environment accelerates the reuse and reanalysis of public proteome mass spectrometry data Reviewed
Shujiro Okuda, Akiyasu C Yoshizawa, Daiki Kobayashi, Yushi Takahashi, Yu Watanabe, Yuki Moriya, Atsushi Hatano, Tomoyo Takami, Masaki Matsumoto, Norie Araki, Tsuyoshi Tabata, Mio Iwasaki, Naoyuki Sugiyama, Yoshio Kodera, Satoshi Tanaka, Susumu Goto, Shin Kawano, Yasushi Ishihama
Nucleic Acids Research 2024.11
GlyComb: A novel glycoconjugate data repository that bridges glycomics and proteomics Reviewed
Yushi Takahashi, Masaaki Shiota, Akihiro Fujita, Issaku Yamada, Kiyoko F. Aoki-Kinoshita
Journal of Biological Chemistry 2024.2
糖鎖科学ポータルGlyCosmosの利便性向上
細田 正恵, 山田 一作, 塩田 正明, 高橋 悠志, 新町 大輔, 小野 多美子, 土屋 伸一郎, 松原 正陽, 木村 直貴, 瀬野 瑛, 藤田 昌大, 金 進東, 岡谷 千晶, 久野 敦, 藤田 典昭, 安形 清彦, 梶 裕之, 成松 久, 奥田 修二郎, 木下 聖子
トーゴーの日2021 1 2021.10
MCAW-DB: A glycan profile database capturing the ambiguity of glycan recognition patterns Reviewed
Masae Hosoda, Yushi Takahashi, Masaaki Shiota, Daisuke Shinmachi, Renji Inomoto, Shinichi Higashimoto, Kiyoko F. Aoki-Kinoshita
Carbohydrate Research 2018.7
MB-POST: A novel data repository for storing high-quality spectral data in metabolomics mass spectrometry
Yushi Takahashi, Akiyasu C. Yoshizawa, Takato Kiuchi, Fumio Matsuda, Shujiro Okuda
第97回日本生化学会大会 要旨集 2024.11
Development of a new glycan-related pathway repository: GlycoPathwayRepo
Sunmyoung Lee, Tamiko Ono, Masaaki Shiota, Yushi Takahashi, Kiyoko Aoki-Kinoshita
1st Asia & Pacific Bioinformatics Joint Conference (APBJC) 要旨集 (Web) [24-VIII-2] 2024.10
Mass spectrometry data repositories facilitate the multi-omics experimental data accumulation and reanalysis
Yushi Takahashi, Akiyasu C. Yoshizawa, Fumio Matsuda, Kiyoko F. Aoki-Kinoshita, Yasushi Ishihama, Shujiro Okuda
1st Asia & Pacific Bioinformatics Joint Conference (APBJC) 要旨集 (Web) [24-VIII-3] 2024.10
Accelerating data re-analysis in jPOST using metadata from JPDM data papers
高橋悠志, 吉沢明康, 小林大樹, 守屋勇樹, 幡野敦, 高見知代, 松本雅記, 荒木令江, 田畑剛, 田畑剛, 岩崎未央, 杉山直幸, 小寺義男, 福島敦史, 田中聡, 五斗進, 河野信, 奥田修二郎, 石濱泰
日本プロテオーム学会大会プログラム・抄録集 2024 (Web) 2024.6
GlyComb: A novel glycoconjugate data repository towards an infrastructure of multi-omics data analyses
Yushi Takahashi, Masaaki Shiota, Akihiro Fujita, Kiyoko F. Aoki-Kinoshita
26th International Symposium on Glycoconjugates (Glyco26) 要旨集 2023.8
Development of a new glycan-related pathway repository: GlycoPathwayRepo
LEE Sunmyoung, 小野多美子, 高橋悠志, 塩田正明, 藤田晶大, 木下聖子, 木下聖子
日本糖質学会年会要旨集 42nd 2023
Development of MicroGlycoCurator: a Curation System for Microbial Glycan-Related Information
内野敦斗, 高橋悠志, LEE Sunmyoung, 木下聖子
日本糖質学会年会要旨集 42nd 2023
A comprehensive glycomics data repository workflow by strengthening collaboration between UniCarb-DR and GlycoPOST
Yushi Takahashi, Shujiro Okuda, Kiyoko F. Aoki-Kinoshita
The 4th Australasian Glycoscience Symposium and 9th Warren Workshop for Glycoanalytics 要旨集 2022.11
Integration of UniCarb-DR and GlycoPOST towards a comprehensive glycomics data repository workflow
高橋悠志, 奥田修二郎, 木下聖子
第11回生命医薬情報学連合大会 (IIBMP2022) 要旨集 2022.9
Glycan-related omics data integrated in the GlyCosmos Glycoscience Portal
木下聖子, 塩田正明, 高橋悠志, 新町大輔, 小野多美子, 土屋伸一郎, 松原正陽, 木村直貴, 瀬野瑛, 細田正恵, 藤田昌大, KIM Jin-Dong, 岡谷千晶, 久野敦, 藤田典昭, 安形清彦, 梶裕之, 成松久, 奥田修二郎, 山田一作
日本分子生物学会年会プログラム・要旨集(Web) 44th 2021
Glycoscience portal GlyCosmos 2021
山田一作, 塩田正明, 高橋悠志, 新町大輔, 小野多美子, 土屋伸一郎, 松原正陽, 木村直貴, 瀬野瑛, 細田正恵, 藤田昌大, KIM Jin-Dong, 岡谷千晶, 久野敦, 藤田典昭, 安形清彦, 梶裕之, 成松久, 奥田修二郎, 木下聖子
日本糖質学会年会要旨集 40th 2021
糖鎖アレイ実験データを解析した結果のMCAW-DBデータベース構築
細田正恵, 細田正恵, 高橋悠志, 塩田正明, 新町大輔, 天笠英治郎, 木下聖子, 木下聖子, 木下聖子
日本糖質学会年会要旨集 38th 2019
RINGSツールのHTML5を用いた開発
井本蓮二, 東本伸一, 高橋悠志, 細田正恵, 木下聖子
日本糖質学会年会要旨集 36th 2017
木編集距離を用いた糖鎖の多重配列アラインメントツールの開発
高橋悠志, 木下聖子
日本糖質学会年会要旨集 35th 2016.9
A new glycan multiple alignment algorithm using tree edit distance
Yushi Takahashi, Kiyoko F. Aoki-Kinoshita
6th Charles Warren Workshop 2016 要旨集 2016.8
糖鎖関連情報活用に向けたGlycomeAtlasの機能拡張
高橋悠志, 関本里紗, 木下聖子
日本糖質学会年会要旨集 34th 2015
Elucidation of disease-related glycosylation patterns by developing a method for calculating glycopeptide similarity
Grant number：24K23887
2024.7 - 2026.3
System name：Grants-in-Aid for Scientific Research
Research category：Grant-in-Aid for Research Activity Start-up
Awarding organization：Japan Society for the Promotion of Science
Grant amount：\2860000 （ Direct Cost: \2200000 、 Indirect Cost：\660000 ）
Algorithm theory
